From pulsenetafrica at lists.wits.ac.za Mon May 11 09:24:19 2015 From: pulsenetafrica at lists.wits.ac.za (pulsenetafrica at lists.wits.ac.za) Date: Mon, 11 May 2015 09:24:19 +0200 Subject: [PulseNet Africa] FW: [CNPHI-RCRSP] New message posted. In-Reply-To: <921253609.35871431088996100.JavaMail.SYSTEM@appserver2> References: <921253609.35871431088996100.JavaMail.SYSTEM@appserver2> Message-ID: From Anthony -----Original Message----- From: ypi5 at cdc.gov [mailto:ypi5 at cdc.gov] Sent: 08 May 2015 02:43 PM To: ypi5 at cdc.gov Subject: [CNPHI-RCRSP] New message posted. PulseNet International Collaboration Centre Message posted in forum "Outbreaks and Urgent Notifications". AUTHOR: Jeniffer Concepcion-Acevedo Salmonella Paratyphi B, tartrate (+) illnesses linked to sushi consumption Hello, CDC is currently investigating a cluster of 41 cases of Salmonella Paratyphi B, tartrate (+) illnesses, matching PFGE Xbal pattern JKXX01.1495 from 8 states: [AZ (9), CA (24), IL, MS, NM (3), SD, VA, WI]. Cases ranges in age from <1-68 years, with a median of 30 years, and 46% of cases are female. Reported and estimated illness onset dates range from March 5, 2015 ? April 16, 2015. 25% of cases have been hospitalized and no deaths have been reported. Cases are reported high rates of sushi consumption, particularly sushi containing raw tuna. All domestic exposures reported to date have occurred in the southwestern part of the United States. We would appreciate if you could investigate possible matches in your databases. Attached, please find a TIFF and bundle file with additional information. Thank you very much for your help, Jeniffer Concepcion-Acevedo PulseNet International Coordinator ? TIFF- CAOC_CAOC15031- XbaI pattern JKXX01.1495 - LANE 8 https://www.cnphi-rcrsp.ca/151669 The views expressed in this email are, unless otherwise stated, those of the author and not those of the National Health Laboratory Service or its management. The information in this e-mail is confidential and is intended solely for the addressee. Access to this e-mail by anyone else is unauthorized. If you are not the intended recipient, any disclosure, copying, distribution or any action taken or omitted in reliance on this, is prohibited and may be unlawful. Whilst all reasonable steps are taken to ensure the accuracy and integrity of information and data transmitted electronically and to preserve the confidentiality thereof, no liability or responsibility whatsoever is accepted if information or data is, for whatever reason, corrupted or does not reach its intended destination. -------------- next part -------------- A non-text attachment was scrubbed... Name: CAOC_CAOC15031.TIF Type: application/octet-stream Size: 309956 bytes Desc: CAOC_CAOC15031.TIF URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: JKXX01.1495PN.BDL Type: application/octet-stream Size: 50412 bytes Desc: JKXX01.1495PN.BDL URL: From pulsenetafrica at lists.wits.ac.za Wed May 13 07:12:00 2015 From: pulsenetafrica at lists.wits.ac.za (pulsenetafrica at lists.wits.ac.za) Date: Wed, 13 May 2015 07:12:00 +0200 Subject: [PulseNet Africa] FW: PulseNet Quick Tips: Producing Good Plugs Part 3 In-Reply-To: <12DC494AAFFAE74DA6E2D9B49C2C0F3A5C0EA657@EMBX-CLFT3.cdc.gov> References: <12DC494AAFFAE74DA6E2D9B49C2C0F3A5C0EA657@EMBX-CLFT3.cdc.gov> Message-ID: From: PFGE National Database (CDC) [mailto:pfge at cdc.gov] Sent: 12 May 2015 07:34 PM To: PFGE National Database (CDC) Subject: PulseNet Quick Tips: Producing Good Plugs Part 3 The views expressed in this email are, unless otherwise stated, those of the author and not those of the National Health Laboratory Service or its management. The information in this e-mail is confidential and is intended solely for the addressee. Access to this e-mail by anyone else is unauthorized. If you are not the intended recipient, any disclosure, copying, distribution or any action taken or omitted in reliance on this, is prohibited and may be unlawful. Whilst all reasonable steps are taken to ensure the accuracy and integrity of information and data transmitted electronically and to preserve the confidentiality thereof, no liability or responsibility whatsoever is accepted if information or data is, for whatever reason, corrupted or does not reach its intended destination. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image001.jpg Type: image/jpeg Size: 32255 bytes Desc: image001.jpg URL: -------------- next part -------------- A non-text attachment was scrubbed... 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Name: image010.jpg Type: image/jpeg Size: 12974 bytes Desc: image010.jpg URL: From pulsenetafrica at lists.wits.ac.za Wed May 13 07:23:21 2015 From: pulsenetafrica at lists.wits.ac.za (pulsenetafrica at lists.wits.ac.za) Date: Wed, 13 May 2015 07:23:21 +0200 Subject: [PulseNet Africa] PulseNet WGS implementation for public health surveilance Message-ID: PulseNet whole genome sequencing implementation for public health surveillance - For information, see attached document and link to PulseNet web page: http://www.pulsenetinternational.org/protocols/wgs/ - Note the requirement for BioNumerics software ver. 7.5 Anthony The views expressed in this email are, unless otherwise stated, those of the author and not those of the National Health Laboratory Service or its management. The information in this e-mail is confidential and is intended solely for the addressee. Access to this e-mail by anyone else is unauthorized. If you are not the intended recipient, any disclosure, copying, distribution or any action taken or omitted in reliance on this, is prohibited and may be unlawful. Whilst all reasonable steps are taken to ensure the accuracy and integrity of information and data transmitted electronically and to preserve the confidentiality thereof, no liability or responsibility whatsoever is accepted if information or data is, for whatever reason, corrupted or does not reach its intended destination. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: NGS_FAQs - 2015-05-11.docx Type: application/octet-stream Size: 70190 bytes Desc: NGS_FAQs - 2015-05-11.docx URL: From pulsenetafrica at lists.wits.ac.za Wed May 13 13:53:12 2015 From: pulsenetafrica at lists.wits.ac.za (pulsenetafrica at lists.wits.ac.za) Date: Wed, 13 May 2015 13:53:12 +0200 Subject: [PulseNet Africa] Quotation for BioNumerics ver 7.5 software Message-ID: Further to message sent earlier in the day. See correspondence below and attached quotation. Regards, Anthony From: Nathalie Tack [mailto:Nathalie_Tack at applied-maths.com] Sent: 13 May 2015 01:43 PM To: Anthony Smith Cc: Koen Janssens; Stijn De Graeve Subject: RE: BioNumerics ver 7.5 quotation Dear Anthony, Thank you for your continued interest in the BioNumerics software. Please find enclosed the requested quotation for a standalone license of the BioNumerics software version 7.5. Please have a look at the modules I listed down, and also at the attached file listing all available modules. With the Character data, Sequence data and Tree and Network Inference module you will be able to perform wgMLST analysis. More information about MLST analysis in BioNumerics can be found on our website: 1) Traditional MLST: http://www.applied-maths.com/applications/mlst 2) Whole genome MLST: http://www.applied-maths.com/applications/wgmlst Please feel free to contact us if more information is needed. Best regards, Nathalie Applied Maths NV The views expressed in this email are, unless otherwise stated, those of the author and not those of the National Health Laboratory Service or its management. The information in this e-mail is confidential and is intended solely for the addressee. Access to this e-mail by anyone else is unauthorized. If you are not the intended recipient, any disclosure, copying, distribution or any action taken or omitted in reliance on this, is prohibited and may be unlawful. Whilst all reasonable steps are taken to ensure the accuracy and integrity of information and data transmitted electronically and to preserve the confidentiality thereof, no liability or responsibility whatsoever is accepted if information or data is, for whatever reason, corrupted or does not reach its intended destination. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image003.jpg Type: image/jpeg Size: 5958 bytes Desc: image003.jpg URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image004.jpg Type: image/jpeg Size: 19891 bytes Desc: image004.jpg URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 13792.pdf Type: application/pdf Size: 347302 bytes Desc: 13792.pdf URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: BN_75_SML.pdf Type: application/pdf Size: 176753 bytes Desc: BN_75_SML.pdf URL: From pulsenetafrica at lists.wits.ac.za Sun May 17 02:38:36 2015 From: pulsenetafrica at lists.wits.ac.za (pulsenetafrica at lists.wits.ac.za) Date: Sun, 17 May 2015 00:38:36 +0000 (UTC) Subject: [PulseNet Africa] Quotation for BioNumerics ver 7.5 software In-Reply-To: <1431518800411.1009127137@boxbe> References: <1431518800411.1009127137@boxbe> Message-ID: Dear Anthony, Thank you Anthony and Nathalie, Information about this soft ware is received. Stephen NdibowaMedical Laboratory ScientistUganda On Wednesday, May 13, 2015 3:06 PM, "pulsenetafrica at lists.wits.ac.za" wrote: This message is eligible for Automatic Cleanup! (pulsenetafrica at lists.wits.ac.za) Add cleanup rule | More info Further to message sent earlier in the day. ?See correspondence below and attached quotation. ?Regards, ?Anthony ? ? ? ? ? ? ?From: Nathalie Tack [mailto:Nathalie_Tack at applied-maths.com] Sent: 13 May 2015 01:43 PM To: Anthony Smith Cc: Koen Janssens; Stijn De Graeve Subject: RE: BioNumerics ver 7.5 quotation ?Dear Anthony, ?Thank you for your continued interest in the BioNumerics software. ?Please find enclosed the requested quotation for a standalone license of the BioNumerics software version 7.5. Please have a look at the modules I listed down, and also at the attached file listing all available modules. With the Character data, Sequence data and Tree and Network Inference module you will be able to perform wgMLST analysis. ?More information about MLST analysis in BioNumerics can be found on our website:? 1) Traditional MLST: http://www.applied-maths.com/applications/mlst2) Whole genome MLST: http://www.applied-maths.com/applications/wgmlst ?Please feel free to contact us if more information is needed. ?Best regards, ?Nathalie Applied Maths NV ? The views expressed in this email are, unless otherwise stated, those of the author and not those of the National Health Laboratory Service or its management. The information in this e-mail is confidential and is intended solely for the addressee.Access to this e-mail by anyone else is unauthorized. If you are not the intended recipient, any disclosure, copying, distribution or any action taken or omitted in reliance on this, is prohibited and may be unlawful.Whilst all reasonable steps are taken to ensure the accuracy and integrity of information and data transmitted electronically and to preserve the confidentiality thereof, no liability or responsibility whatsoever is accepted if information or data is, for whatever reason, corrupted or does not reach its intended destination. | | This communication is intended for the addressee only. It is confidential. If you have received this communication in error, please notify us immediately and destroy the original message. You may not copy or disseminate this communication without the permission of the University. Only authorised signatories are competent to enter into agreements on behalf of the University and recipients are thus advised that the content of this message may not be legally binding on the University and may contain the personal views and opinions of the author, which are not necessarily the views and opinions of The University of the Witwatersrand, Johannesburg. All agreements between the University and outsiders are subject to South African Law unless the University agrees in writing to the contrary. | _______________________________________________ Pulsenetafrica mailing list Pulsenetafrica at lists.wits.ac.za http://lists.wits.ac.za/mailman/listinfo/pulsenetafrica | -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/jpeg Size: 5958 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... 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